qmk_firmware/keyboards/launchpad/rev1/rev1.c

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#include "launchpad.h"
void matrix_init_kb(void) {
// JTAG disable for PORT F. write JTD bit twice within four cycles.
MCUCR |= (1<<JTD);
MCUCR |= (1<<JTD);
// Undo init of RX LED, we use that port currently
//DDRB &= ~(1<<0);
matrix_init_user();
};